code getter for illumina, pacbio, oxford long reads alignments.
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Updated
May 2, 2024 - Shell
code getter for illumina, pacbio, oxford long reads alignments.
Nanopore based RNA-Seq pipeline for viral samples
Documentation for running microPIPE at Pawsey
This repo is for the scripts used in preparation of Flongle Actinomycetes paper
Run Oxford Nanopore MinION software in Docker containers. Mirror of https://gitlab.com/lapinskim/minion_docker
Wastewater Enterovirus Typing Tool
Documentation for the https://github.com/JannesSP/read5 repository
bcftools for dealing with bcf files.
Accompanying information to a scientific publication on the assembly of bacterial genomes using Illumina and nanopore sequencing data using Unicylcer.
pattern detection in R using the stringR package for the pacbio and the oxford nanopore reads
Nextflow pipeline incorporating the tracm alignment step alone.
Project to simulate simple Oxford Nanopore Technologies RNA signals
Nextflow pipeline for basecalling / demultiplexing ONT data, using Dorado
This page is contains all the software and commands I've used for my mtDNA analysis.
long_read_polyATGC_trimmer using regular expression.
polyATGC pacbio or oxford nanopore long reads trimmer.
Scripts for Basecalling on GridION Sequenicng machines from Oxford Nanopore
poreSTAT: a python framework for working with fast5 third generation sequencing data
Wrapper to read fast5 and pod5 files.
A pipeline for variant calling from P. falciparum short reads generated from Illumina and ONT libraries
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