SaprotHub: Making Protein Modeling Accessible to All Biologists
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Updated
Jun 1, 2024 - Python
SaprotHub: Making Protein Modeling Accessible to All Biologists
A predictor of GPCR couplings with G-proteins/B-arrs using Transformers
This package provides an basic implementation of the contact prediction network used in AlphaFold 1 for beginner, associated model weights and CASP13 dataset as used for CASP13 (2018) and published in Nature
Large scale, in silico interaction analyses of SARS-CoV-2 nucleocapsid protein variants against human cytokines.
Sequence based PPI prediction algorithm is developed using Xgboost. Around 73,000 positive and negative interacting protein pairs were extracted from Pan’s PPI dataset
Dataset and utilities for working with protein-protein interactions in 3D
Webpage of the HADDOCK group
Webpage of the Bonvinlab @ Utrecht University and HADDOCK software
CPORT is a Consensus Prediction Of interface Residues in Transient complexes used to predict protein-protein interface residues.
Calculation of interatomic interactions in molecular structures
Screen interactions with AlphaFold-Multimer
interpro to graphs for analyzing domains.
Incorporating Triplet Error for Predicting PPIs using Deep Learning
Protein-Protein Docking using Genetic Algorithm
Bioinformatic tool to predict structural protein-protein interfaces
Uniprot metal binding site challenge
WeSA (Weighted SocioAffinity): a tool for improving affinity proteomics data.
MAGPIE
Exploring Isoform-specific interactions
A network-based approach for exon set enrichment
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