Sequence based PPI prediction algorithm is developed using Xgboost. Around 73,000 positive and negative interacting protein pairs were extracted from Pan’s PPI dataset
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Updated
May 24, 2024
Sequence based PPI prediction algorithm is developed using Xgboost. Around 73,000 positive and negative interacting protein pairs were extracted from Pan’s PPI dataset
Progressive Transfer Learning for Peptide-Protein-Specific Interaction Profiling based on Interpretable Biological Sequence Pragmatic Analysis
Single-file Numba-accelerated Python implementation of Gotoh affine gap penalty extensions for the Needleman–Wunsch and Smith-Waterman algorithms
programs and scripts, mainly python, for analyses related to nucleic or protein sequences
📖🔬☕ BioJava is an open-source project dedicated to providing a Java library for processing biological data.
Revolutionizing DNA analysis and making it accessible to all through innovative AI-powered analysis and interpretive tools.
A Python API for the RCSB Protein Data Bank (PDB)
Pipeline for searching and aligning contact maps for proteins, then running DeepFri's GCN.
Multimodal Pretraining for Unsupervised Protein Representation Learning
Using data from PDBePISA with the convenience of Python and Jupyter.
from protein alignments to deep learning preparatory.
PyMod 3 - sequence similarity searches, multiple sequence/structure alignments, and homology modeling within PyMOL.
Directed Evolution in Silico
a ruby gem for protein alignments. index the protein alignments, extract the regions of interest, extract the locus, extract the alignments
Implement, train, tune, and evaluate a transformer model for antibody classification with this step-by-step code.
💊 Molecular informatics toolkit with integration of bioinformatics and cheminformatics tools for drug discovery
🧬 Toolkit for generating various numerical features of protein sequences
A python package to compute clusters of sequence feature variant types (SFVTs) based upon user-selected subsequence.
Protein Language Model (pLM) Powered Protein Crotonylation (Kcr) Modified Site Predictor
stitching coding regions from exon alignments for the protein to genome alignments.
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