Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Genome Biology
-
Updated
May 6, 2022 - Jupyter Notebook
Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Genome Biology
2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF
Single cell interactive plotting tools
Epi-Impute: single-cell RNA-seq imputation via integration with single-cell ATAC-seq data
A reference matrix atlas of all single cell RNA-seq data on NCBI GEO for mice and humans
RNA-seq, smRNA-seq, scRNA-seq & ATAC-seq workflows for @cornell-TREX
So you want to do a: Single Cell RNA-seq experiment
An effective tool for single-cell RNA sequencing.
Gotta keep the brain empty to learn more. This is my easily digestible backup.
Seismic R package. Discover cell type-trait associations in minutes for GWAS and single-cell RNA-sequencing data
I've written a few functions that help me look through scRNA-seq data while working with Seurat.
10x Cell Ranger Docker Image
Docker container for combining UniverSC and SCAFE for 5' RNA-Seq data
Add a description, image, and links to the scrna topic page so that developers can more easily learn about it.
To associate your repository with the scrna topic, visit your repo's landing page and select "manage topics."