Perform read mapping and variant calling using snippy
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Updated
Feb 22, 2024 - Nextflow
Perform read mapping and variant calling using snippy
NextFlow pipeline for mitochondria sequence reconstruction
A toolset for data pipelines in Genomics
A chamada de variantes envolve a identificação de polimorfismos de nucleotídeo único (SNPs) e pequenas inserções e deleções (indels) em dados de Sequenciamento de Nova Geração (NGS). Nesta pipeline descrevo a detecção de SNP para identificação de possíveis alterações de aminoácidos em proteínas virais.
Multi-class classification of drug resistance in MTB clinical isolates
A collection of data sets for benchmarking de novo variant discovery tools
Script to convert Duplex Sequencing .mutpos file formats into valid VCF files
A python script for generating sample VCF data based on a template VCF
Snake Genotyping By Sequencing. A reimplementation of Fast-GBS using snakemake.
A simple tool for SNP mutation type determination.
Empirical Bayes somatic variant calling
A Custom Variant Calling Pipeline for Dengue WGS (BWA + GATK + Lofreq) using nextflow and docker
A WDL-based workflow for extraction of variants and their associated info from large VCF files
Convert genomic coordinates from the Human Genome version 19 (hg19) to version 38 (hg38)
workflow that generates genotype fingerprints consumed by SampleFingerprinting workflow
NanoSwe: Analysing nanopore (PromethION) data of Swedish genomes
Short pipelines for NGS data analysis
Repository detailing a Nextflow pipeline to run mpileup variant callling on TF footprints.
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