docs(parser): clarify mixed codebase configuration #861
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Fixes #853
People were having some problems because we now throw errors if files aren't included in the tsconfig.
For mixed js/ts codebases, this is pretty much the default state, as users didn't run typescript on their JS code.
This just clarifies the documentation so that it covers all the bases.
Also moved
createDefaultProgram
to the bottom of the list and emphasised that people shouldn't use it.