5.1.3

Release 5.1.3 of the Unipept Web application is a maintenance release that improves the documentation on the website.

Enhancements:

• Add Unipept Desktop 2.0 publication to the list of publications (#1564)

Bug fixes:

• Update link to increase Docker space on Windows tutorial (#1551)

5.1.2

Release 5.1.2 of the Unipept Web application fixes some textual inconsistencies that were present in the application.

Bug fixes:

• Renamed "test" to "Feature type" in the heatmap wizard (unipept/unipept-web-components#226)
• Capitalise "pride" in the dataset creation card (#1562)
• Rename "Equate I and L?" to "Equate I and L" (#1562)

5.1.1

This release of the Unipept Web application fixes a few bugs and inconsistenties that are the result from the big dependency upgrade that we performed for v5.1 of Unipept.

Bug fixes:

• Fixed the styling and inner workings of the multi dataset heatmap (#1559)
• Fixed clicking on an app in the navigation bar did not reset the current app (#1559, #1557)
• Set a maximum width for the content of the pages (#1559)
• Fixed wrong GitHub repositories where used for news pages (#1559)
• Fixed styling of the cog icon on the EC-numbers and InterPro-entries summary pages (#1559)
• Updated parsing of changelogs for product releases such that it works with MarkDown (#1559)
• Fixed styling of links in peptide summary of TPA tool (#1559)
• Fixed inter-assay heatmap in MPA tool (#1558)

5.1.0

This release of the Unipept Web application does not introduce any major new features, but comprises a complete update of the underlying codebase to Vue 3 and Vuetify 3 (coming from Vue and Vuetify 2), making Unipept resilient for the future again.

New features/enhancements:

• Upgrade Vue 2 to Vue 3
• Upgrade Vuetify 3 to Vuetify 3
• Improved error handling. If a network failure occurs, an error is now properly displayed explaining what went wrong.

Bug fixes:

• Fixed a bug that caused the single tryptic peptide analysis to not properly take into account the equate_il setting.

5.0.9

This is a minor release of the Unipept web application with some bug fixes and improved documentation.

Enhancements:

• Add documentation for the new protinfo API endpoint that will be released shortly (#1548)

Bug fixes:

• Fixed a bug where CSV files exported from Unipept now also correctly list peptides containing the isoleucine amino acid when the equate IL option is enabled (#1549)

5.0.8

This maintenance release of the Unipept Web application fixes 2 bugs.

Bug fixes:

• Fixed links from the metaproteomics analysis page to the tryptic analysis page (#219)
• Fixed undefined rank was always showing in the title of the "hierarchical outline visualization" info pane (#219)

5.0.7

This is a minor release of the Unipept Web application that provides a fix for a few smaller bugs.

Bug fixes:

• All version numbers of Unipept applications on the homepage are now pointing to the correct repository (#1543).
• Updated API documentation to reflect deprecation of proteomes / RefSeq / EMBL (#1544).

5.0.6

This release fixes a few things and helps Unipept to keep track of the features that are most used by users.

New features / enhancements:

• Downloading an image of the treeview visualization in the functional annotations tables works again (#32)
• Useage of pages and features is now better monitored (#31)
• Current UniProt version that is being used is now displayed in the page footer (#30)

4.6.4

• [Improved] efficiency of missed cleavage handling (split into smaller queries)
• [Fixed] issue where not all InterPro-entries were reported when missed cleavage handling was enabled

4.3.0

• [Added] support for processing multiple samples at once for Metaproteomics Analysis
• [Added] a completely new comparative analysis for Metaproteomics Analysis
• [Added] support for InterPro annotations in functional analysis
• [Improved] Tryptic Peptide Analysis with new matched proteins overview.
• [Improved] completely rewrote Metaproteomics Analysis in TypeScript with Vue and Vuetify
• [Improved] completely rewrote Tryptic Peptide Analysis in TypeScript with Vue and Vuetify
• [Improved] error handling and user notification in case network requests fail
• [Improved] functional analysis overview with new, interactive, data tables
• [Removed] external links to PeptideAtlas and PRIDE for proteins in Tryptic Peptide Analysis