Complete cell-SAM with two channel selection #131
Workflow file for this run
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| # TODO: Want to get this working, but need to refactor backend to use environment variables | |
| # instead of decouple so that we can deploy locally and with Github actions. On the frontend | |
| # side, need to resolve the permission issue regarding the bucket being public | |
| name: deploy | |
| on: | |
| pull_request: | |
| push: | |
| branches: | |
| - main | |
| jobs: | |
| eb-deploy: | |
| if: false | |
| # if: github.ref == 'refs/heads/main' && github.repository_owner == 'vanvalenlab' | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v3 | |
| - name: Generate deployment package | |
| working-directory: ./backend | |
| run: zip -r deploy.zip . -x '*.git' | |
| - name: Deploy to EB | |
| uses: einaregilsson/beanstalk-deploy@v21 | |
| with: | |
| aws_access_key: ${{ secrets.AWS_ACCESS_KEY_ID }} | |
| aws_secret_key: ${{ secrets.AWS_SECRET_ACCESS_KEY }} | |
| application_name: caliban-test-with-db | |
| environment_name: deepcell-label-dev | |
| version_label: ${{ github.sha }} | |
| region: us-east-2 | |
| deployment_package: ./backend/deploy.zip | |
| s3-sync: | |
| if: false | |
| # if: github.ref == 'refs/heads/main' && github.repository_owner == 'vanvalenlab' | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v3 | |
| - name: Use Node.js 16.x | |
| uses: actions/setup-node@v3 | |
| with: | |
| node-version: 16.x | |
| - name: Cache node_modules | |
| uses: actions/cache@v3 | |
| with: | |
| path: "frontend/**/node_modules" | |
| key: ${{ runner.os }}-modules-${{ hashFiles('frontend/**/yarn.lock') }} | |
| restore-keys: | | |
| ${{ runner.os }}-yarn- | |
| ${{ runner.os }}- | |
| - name: Yarn Install | |
| working-directory: frontend | |
| run: yarn install --update-checksums | |
| - name: Generate production build | |
| env: | |
| CI: false | |
| working-directory: ./frontend | |
| run: yarn build | |
| - name: Deploy to S3 | |
| uses: jakejarvis/s3-sync-action@master | |
| with: | |
| args: --acl public-read --follow-symlinks --delete | |
| env: | |
| AWS_S3_BUCKET: ${{ secrets.AWS_S3_BUCKET_LABEL_DEV }} | |
| AWS_ACCESS_KEY_ID: ${{ secrets.AWS_ACCESS_KEY_ID }} | |
| AWS_SECRET_ACCESS_KEY: ${{ secrets.AWS_SECRET_ACCESS_KEY }} | |
| AWS_REGION: "us-east-2" | |
| SOURCE_DIR: "./frontend/build" |