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benchmark_microbiome_transformations
benchmark_microbiome_transformations PublicCode to reproduce the analyses from the paper "Benchmarking microbiome transformations favors experimental quantitative approaches to address compositionality and sampling depth biases"
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polyester
polyester PublicForked from alyssafrazee/polyester
Bioconductor package "polyester", devel version. RNA-seq read simulator.
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syntheticGutCommunity
syntheticGutCommunity PublicCode to reproduce the RNA-seq analysis from the paper "Mechanistic modeling identifies emergent behavior in a synthetic human gut community"
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