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Popular repositories

  1. benchmark_microbiome_transformations benchmark_microbiome_transformations Public

    Code to reproduce the analyses from the paper "Benchmarking microbiome transformations favors experimental quantitative approaches to address compositionality and sampling depth biases"

    R 2 4

  2. wc2019 wc2019 Public

    Tutorial on modeling metabolic pathways with ODEs, from the EMBO Whole Cell Modeling summer school

    Jupyter Notebook 1 1

  3. polyester polyester Public

    Forked from alyssafrazee/polyester

    Bioconductor package "polyester", devel version. RNA-seq read simulator.

    R

  4. vllorens.github.io vllorens.github.io Public

    Personal website of Veronica Llorens Rico

    HTML

  5. syntheticGutCommunity syntheticGutCommunity Public

    Code to reproduce the RNA-seq analysis from the paper "Mechanistic modeling identifies emergent behavior in a synthetic human gut community"

    R 2

  6. metaester metaester Public

    Simulate metatranscriptomics datasets

    R 1