Skip to content

Issues: Clinical-Genomics/BALSAMIC

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

93 Open 520 Closed
93 Open 520 Closed
Author
Filter by author
Label
Filter by label
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Milestones
Filter by milestone
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

[User Story] Add more SV databases for frequency filtering User-Story A User-Story describing new functionality
#1442 opened May 29, 2024 by mathiasbio
3 tasks
[User Story] Add adapter trimming to the UMI workflow User-Story A User-Story describing new functionality
#1440 opened May 28, 2024 by mathiasbio
3 tasks
Release 16
@mathiasbio
[User Story] Rebuild PONs with new samples and bioinfo-methods User-Story A User-Story describing new functionality
#1439 opened May 28, 2024 by mathiasbio
3 tasks
Release 16
@mathiasbio
[Assessment] Ensure no strand-bias issues from using UMI-collapsed reads in TNscope Assessment Investigation before a user-story can be made
#1438 opened May 27, 2024 by mathiasbio Release 16
[User Story] LoqusDB for FFPE samples Urgency Small User-Story A User-Story describing new functionality
#1437 opened May 23, 2024 by khurrammaqbool
3 tasks
[User Story] Parse tumor purity estimate to be fetched for Scout Effort Medium Gain Small Urgency Small User-Story A User-Story describing new functionality
#1436 opened May 23, 2024 by khurrammaqbool
3 tasks
[User Story] Improve CNV calling for target workflow Gain Large Needs Refinement User-Story A User-Story describing new functionality
#1435 opened May 20, 2024 by ivadym
2 of 4 tasks
[Bug] DNAscope gnomad rule failing due to memory Bug Something isn't working Needs Refinement
#1431 opened May 7, 2024 by mathiasbio
@mathiasbio
1
[User Story] Implementation of a unified pre and unified post annotation SV filters User-Story A User-Story describing new functionality
#1430 opened Apr 26, 2024 by khurrammaqbool
3 tasks
@khurrammaqbool
[User Story] Replace VarDict with TNscope User-Story A User-Story describing new functionality
#1428 opened Apr 15, 2024 by mathiasbio
3 tasks
Release 16
1
@mathiasbio
[Assessment] Do we need to maintain support for canfam3? Assessment Investigation before a user-story can be made
#1427 opened Apr 10, 2024 by mathiasbio
[Bug] Ensure Balsamic is working for hg38 Bug Something isn't working
#1425 opened Apr 4, 2024 by mathiasbio Release 16
@ivadym
[Bug] Enable IGH DUX4 detection for hg38 Bug Something isn't working Effort Small Gain Medium Urgency Small
#1421 opened Mar 21, 2024 by ivadym Release 16
@fevac
[User Story] SweGen and CADD reference data Effort Small Gain Medium Needs Refinement Urgency Medium User-Story A User-Story describing new functionality
#1418 opened Mar 12, 2024 by pbiology
3 tasks
[User Story] HRD detection in Balsamic User-Story A User-Story describing new functionality
#1417 opened Mar 8, 2024 by mathiasbio
3 tasks
Release 17
[User Story] COSMIC signatures/profiles User-Story A User-Story describing new functionality
#1416 opened Mar 8, 2024 by mathiasbio
3 tasks
1
[User Story] Update to GATK 4 Effort Medium Gain Small Urgency Large User-Story A User-Story describing new functionality
#1409 opened Mar 6, 2024 by pbiology
3 tasks
Release 16
1
@khurrammaqbool
[User Story] Create TNscope PON User-Story A User-Story describing new functionality
#1405 opened Mar 1, 2024 by mathiasbio
3 tasks
Release 16
1
[Assessment] CNV calling in low purity samples Assessment Investigation before a user-story can be made
#1401 opened Feb 26, 2024 by mathiasbio
5 tasks
1
1
[Assessment] Do we need additional callers for ITD? Assessment Investigation before a user-story can be made Needs Refinement
#1399 opened Feb 14, 2024 by mathiasbio Release 16
[Bug] MulltiQC intermediate JSON files do not store sample id as key Bug Something isn't working
#1398 opened Feb 14, 2024 by ChrOertlin
[User Story] Update CADD to 1.7 to improve variant effect prediction User-Story A User-Story describing new functionality
#1390 opened Feb 7, 2024 by mathiasbio
3 tasks
[User Story] Parallel calling and merging in UMI workflow with different collapse methods User-Story A User-Story describing new functionality
#1389 opened Feb 6, 2024 by mathiasbio
3 tasks
Release 17
[Assessment] Does using call-regions option Manta allow for variants with only 1 BND in target-bed? Assessment Investigation before a user-story can be made
#1387 opened Feb 5, 2024 by mathiasbio
2
[User Story] Integrate TGA CNV results into GENS User-Story A User-Story describing new functionality
#1385 opened Jan 31, 2024 by mathiasbio
3 tasks
Release 16
@mathiasbio
ProTip! Find all open issues with in progress development work with linked:pr.