Fix Docker RuntimeError: can't start new thread

[1.5.1]

Fixed

• Revert to python 3.8 in Dockerfile to avoid RuntimeError: can't start new thread issue

Updates and deprecated code removal

[1.5]

Changed

• Updated version of external images used in GitHub actions
• Updated Python version to v3.11 in tests GitHub action
• Removed pytest from the package dependencies

Fixed

• Converted deprecated Pydantic validators and Config into Pydantic 2 format

Support Python >=3.8 and upgrade Pydantic to v2

[1.4]

Changed

• Updated Pydantic(^2.5.2) library and other dependencies
• Support Python>=3.8

Python 3.11 in Dockerfile plus fixes and lib updates

[1.3]

Fixed

• Typo in instructions to download genes in README document

Changed

• Code formatted with black and black check GitHub action
• Renamed schug.load.ensembl.fetch_ensembl_exon_lines function to schug.load.ensembl.fetch_ensembl_exons
• Upgraded Python version from 3.8 to 3.11 in Dockerfile
• Updated several python libraries in poetry.lock

Include Mane transcripts info and support official genome build names

[1.2]

Added

• Include also mane_plus_clinical and mane_select columns in transcripts file downloaded from Ensembl

Changed

• Updated Uvicorn library
• Accept also GRCh37 and GRCh38 as build values when downloading resources

Fixed PyPI push action and demo instance to use a memory database

[1.1]

Changed

• Move the schug directory up in root dir folder

Fixed

• Use a memory database as default database in demo instance
• Issues flagged by SonarCloud
• Publish to PyPI GitHub action

Proxy endpoints to Ensembl genes, exons and transcripts

[1.0.0]

Added

• Endpoint to Ensembl genes download
• Endpoint to Ensembl transcripts download
• Endpoint to Ensembl exons download
• Dockerfile and docker-compose files
• Push to Docker Hub -prod and stage- GitHub actions
• Publish to PyPI GitHub actions
• Run tests GitHub action
• CHANGELOG file

Changed

• Run the app with Python>=3.8

Fixed

• Typing errors in fetch_ensembl_exons and fetch_genes_to_hpo_to_disease that prevented the app from starting